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SRX10368592: GSM5176502: PigGeCKO_Control; Sus scrofa; OTHER
1 ILLUMINA (Illumina HiSeq 3000) run: 30.5M spots, 9.2G bases, 3.3Gb downloads

Submitted by: NCBI (GEO)
Study: Genome-scale CRISPR screen identifies TMEM41B as a critical host factor required for coronavirus replication [PigGeCKO]
show Abstracthide Abstract
We use the a porcine genome-scale CRISPR/Cas9 knockout (PigGeCKO) library (Zhao et al., 2020) to identify key host factors facilitating TGEV infection in porcine cells. Overall design: We generated a PigGeCKO cell collection (in the PK-15 background) as previously described and performed a genome-wide loss-of-function genetic screen.Briefly, we conducted three rounds of TGEV challenge, employing untreated PK-15-Cas9 cells as a negative control.
Sample: PigGeCKO_Control
SAMN18340674 • SRS8483434 • All experiments • All runs
Organism: Sus scrofa
Library:
Instrument: Illumina HiSeq 3000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Illumina sequencing of sgRNAs in the PigGeCKO cells. Briefly, the genomic DNA from PigGeCKO cells were extracted using a Blood & Cell Culture DNA Midi Kit (QIAGEN), respectively. The sgRNA-coding region was amplified by PCR using Q5 Hot Start High-Fidelity DNA Polymerase (NEB). PCR products were purified.
Experiment attributes:
GEO Accession: GSM5176502
Links:
Runs: 1 run, 30.5M spots, 9.2G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR1399113130,529,9949.2G3.3Gb2021-11-21

ID:
13685166

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